Welcome to the Moser Group neuroscience pipelines

WARNING! This is a frozen branch of the documentation representating the final state of the ``dj-moser-imaging`` branch of the Imaging Pipeline in January 2022.

It is provided for users who may be searching the older version of the pipeline for historically published data. Active users of the current pipeline should search for the latest version of these documents, which reflect the substantial changes that were made to the Imaging pipeline reflecting the focus of the Moser research group.

Common:

• Getting Started
• Common database operations
• How to find what you need
• Common Pipeline Conventions
• Building your own pipeline
• Troubleshooting

Imaging:

• Imaging: Overview
• Imaging: Terminology
• Imaging: The basics
• Table overview in the Imaging pipeline
• Imaging: Naming and Folder logic
• Imaging: Web GUI
• Imaging: DLC
• Imaging: Session Viewer
• Imaging: Synchronisation
• Imaging: Field-of-view unwarping
• Imaging: Helper notebooks

Developer Documentation:

• How to contribute
• Components of the pipeline
• Imaging: Installation
• Running your own workers

Indices and tables

• Index

• Module Index

• Search Page