Welcome to the Moser Group neuroscience pipelines

These web pages provide documentation for the two data management pipelines in use in the Moser Group at NTNU.

Found a problem, a correction, or a humourous cat picture? Contact Simon Ball.

Common:

• Getting Started
• Common database operations
• How to find what you need
• Common Pipeline Conventions
• Mass data ingestion
• Building your own pipeline
• Troubleshooting

Electrophysiology:

• Ephys: Overview
• Ephys: Terminology
• Ephys: Fetching data
• Ephys Naming Conventions
• Ephys Folder Structure
• How is data in the Ephys pipeline processed?
• Ephys: Web GUI
• Ephys: following units across multiple sessions
• Ephys: Mass Ingestion

Imaging:

• Imaging: Overview
• Imaging: Terminology
• Imaging: The basics
• Table overview in the Imaging pipeline
• Imaging: Naming and Folder logic
• Imaging: Web GUI
• Imaging: DLC
• Imaging: Recording Viewer
• Imaging: Synchronisation
• Imaging: Field-of-view unwarping
• Imaging: Helper notebooks

Developer Documentation:

• How to contribute
• Components of the pipeline
• Imaging: Installation
• Running your own workers

Indices and tables

• Index

• Module Index

• Search Page